Started by upstream project "isabelle-repo" build number 621
originally caused by:
 Started by an SCM change
[EnvInject] - Loading node environment variables.
Building remotely on workermta2 (mta_big) in workspace /media/data/jenkins/workspace/isabelle-repo-afp
[isabelle-repo-afp] $ hg showconfig paths.default
[isabelle-repo-afp] $ hg pull --rev 628b271c5b8bc8843cf43b6a36cac870ff4be167
pulling from http://isabelle.in.tum.de/repos/isabelle/
searching for changes
adding changesets
adding manifests
adding file changes
added 9 changesets with 20 changes to 15 files
(run 'hg update' to get a working copy)
[isabelle-repo-afp] $ hg update --clean --rev 628b271c5b8bc8843cf43b6a36cac870ff4be167
15 files updated, 0 files merged, 4 files removed, 0 files unresolved
[isabelle-repo-afp] $ hg log --rev . --template {node}
[isabelle-repo-afp] $ hg log --rev . --template {rev}
[isabelle-repo-afp] $ hg id --branch
[afp] $ hg showconfig paths.default
[afp] $ hg pull --rev default
pulling from https://bitbucket.org/isa-afp/afp-devel/
no changes found
[afp] $ hg update --clean --rev default
325 files updated, 0 files merged, 0 files removed, 0 files unresolved
[afp] $ hg --config extensions.purge= clean --all
[afp] $ hg log --rev . --template {node}
[afp] $ hg log --rev . --template {rev}
No emails were triggered.
[isabelle-repo-afp] $ /bin/sh -xe /tmp/hudson4354043693268093601.sh
+ Admin/jenkins/run_build afp
+ set -e
+ PROFILE=afp
+ shift
+ bin/isabelle components -a
+ bin/isabelle jedit -bf
### Building Isabelle/Scala ...
### Building Isabelle/jEdit ...
+ bin/isabelle ci_build_afp

=== CONFIGURATION ===

ISABELLE_BUILD_OPTIONS=""

ML_PLATFORM="x86_64-linux"
ML_HOME="/media/data/jenkins/.isabelle/contrib/polyml-5.6-1/x86_64-linux"
ML_SYSTEM="polyml-5.6"
ML_OPTIONS="-H 4000 --maxheap 8G"

=== BUILD ===

Build started at Mon, 12 Dec 2016 17:20:35 GMT
Isabelle id 628b271c5b8b
AFP id 5ca40b99bf2a

=== LOG ===

Session Pure/Pure
Session HOL/HOL (main)
Session AFP/AVL-Trees (AFP)
Session AFP/AWN (AFP)
Session AFP/Abortable_Linearizable_Modules (AFP)
Session AFP/Abstract-Hoare-Logics (AFP)
Session AFP/Abstract-Rewriting (AFP)
Session AFP/Decreasing-Diagrams (AFP)
Session AFP/Decreasing-Diagrams-II (AFP)
Session AFP/Matrix (AFP)
Session AFP/Matrix_Tensor (AFP)
Session AFP/Knot_Theory (AFP)
Session AFP/Polynomials (AFP)
Session AFP/Groebner_Bases (AFP)
Session AFP/Abstract_Completeness (AFP)
Session AFP/Allen_Calculus (AFP)
Session AFP/Automatic_Refinement (AFP)
Session AFP/Refine_Monadic (AFP)
Session AFP/Collections (AFP)
Session AFP/CAVA_Base (AFP)
Session AFP/CAVA_Automata (AFP)
Session AFP/DFS_Framework (AFP)
Session AFP/Gabow_SCC (AFP)
Session AFP/LTL_to_GBA (AFP)
Session AFP/CAVA_buildchain1 (AFP)
Session AFP/CAVA_buildchain3 (AFP)
Session AFP/CAVA_LTL_Modelchecker (AFP)
Session AFP/Promela (AFP)
Session AFP/Collections_Examples (AFP)
Session AFP/Dijkstra_Shortest_Path (AFP)
Session AFP/Formal_SSA (AFP)
Session AFP/Sepref_Prereq (AFP)
Session AFP/Refine_Imperative_HOL (AFP)
Session AFP/Sepref_Basic (AFP)
Session AFP/Sepref_IICF (AFP)
Session AFP/Edka_Base (AFP)
Session AFP/EdmondsKarp_Maxflow (AFP)
Session AFP/Transitive-Closure (AFP)
Session AFP/Tree-Automata (AFP)
Session AFP/BinarySearchTree (AFP)
Session AFP/Binomial-Queues (AFP)
Session AFP/Bondy (AFP)
Session AFP/Bounded_Deducibility_Security (AFP)
Session AFP/BytecodeLogicJmlTypes (AFP)
Session AFP/CISC-Kernel (AFP)
Session AFP/CYK (AFP)
Session AFP/Card_Number_Partitions (AFP)
Session AFP/Case_Labeling (AFP)
Session AFP/Cauchy (AFP)
Session AFP/Sqrt_Babylonian (AFP)
Session AFP/Real_Impl (AFP)
Session AFP/Certification_Monads (AFP)
Session AFP/ClockSynchInst (AFP)
Session AFP/Coinductive_Languages (AFP)
Session AFP/Compiling-Exceptions-Correctly (AFP)
Session AFP/Completeness (AFP)
Session AFP/ComponentDependencies (AFP)
Session AFP/Consensus_Refined (AFP)
Session AFP/CryptoBasedCompositionalProperties (AFP)
Session AFP/DPT-SAT-Solver (AFP)
Session AFP/DataRefinementIBP (AFP)
Session AFP/Dependent_SIFUM_Type_Systems (AFP)
Session AFP/Dependent_SIFUM_Refinement (AFP)
Session AFP/Depth-First-Search (AFP)
Session AFP/Derangements (AFP)
Session AFP/Discrete_Summation (AFP)
Session AFP/Card_Partitions (AFP)
Session AFP/DiskPaxos (AFP)
Session AFP/Encodability_Process_Calculi (AFP)
Session AFP/Euler_Partition (AFP)
Session AFP/Example-Submission (AFP)
Session AFP/FFT (AFP)
Session AFP/FLP (AFP)
Session AFP/FeatherweightJava (AFP)
Session AFP/Featherweight_OCL (AFP)
Session AFP/FileRefinement (AFP)
Session AFP/FinFun (AFP)
Session AFP/Finite_Automata_HF (AFP)
Session AFP/FocusStreamsCaseStudies (AFP)
Session AFP/Free-Groups (AFP)
Session AFP/FunWithFunctions (AFP)
Session AFP/FunWithTilings (AFP)
Session AFP/GPU_Kernel_PL (AFP)
Session AFP/Gauss-Jordan-Elim-Fun (AFP)
Session AFP/GenClock (AFP)
Session AFP/General-Triangle (AFP)
Session AFP/GoedelGod (AFP)
Session AFP/GraphMarkingIBP (AFP)
Session AFP/Graph_Theory (AFP)
Session AFP/ShortestPath (AFP)
Session HOL/HOL-Algebra (main timing)
Session AFP/JNF-HOL-Lib (AFP)
Session AFP/JNF-AFP-Lib (AFP)
Session AFP/Jordan_Normal_Form (AFP)
Session AFP/Pre_Perron_Frobenius (AFP)
*** No such file: "/media/data/jenkins/workspace/isabelle-repo-afp/src/HOL/Library/Types_To_Sets.thy"
*** The error(s) above occurred for theory "Types_To_Sets" (line 14 of "$ISABELLE_HOME/afp/thys/Perron_Frobenius/ROOT")
*** The error(s) above occurred in session "Pre_Perron_Frobenius" (line 14 of "$ISABELLE_HOME/afp/thys/Perron_Frobenius/ROOT")
Build step 'Execute shell' marked build as failure
Archiving artifacts
Started calculate disk usage of build
Finished Calculation of disk usage of build in 0 seconds
Started calculate disk usage of workspace
Finished Calculation of disk usage of workspace in 0 seconds
Email was triggered for: Failure - 1st
Trigger Failure - Any was overridden by another trigger and will not send an email.
Trigger Failure - Still was overridden by another trigger and will not send an email.
Sending email for trigger: Failure - 1st
Sending email to: isabelle-ci@mail46.informatik.tu-muenchen.de
Finished: FAILURE