Started by upstream project "isabelle-repo" build number 495
originally caused by:
 Started by an SCM change
[EnvInject] - Loading node environment variables.
Building remotely on workermta2 (mta_big) in workspace /media/data/jenkins/workspace/isabelle-repo-afp
[isabelle-repo-afp] $ hg showconfig paths.default
[isabelle-repo-afp] $ hg pull --rev c9f3a94cb8258c80a6fa5109ddd3bc7ba979d669
pulling from http://isabelle.in.tum.de/repos/isabelle/
searching for changes
adding changesets
adding manifests
adding file changes
added 5 changesets with 9 changes to 8 files
(run 'hg update' to get a working copy)
[isabelle-repo-afp] $ hg update --clean --rev c9f3a94cb8258c80a6fa5109ddd3bc7ba979d669
8 files updated, 0 files merged, 0 files removed, 0 files unresolved
[isabelle-repo-afp] $ hg --config extensions.purge= clean --all
[isabelle-repo-afp] $ hg log --rev . --template {node}
[isabelle-repo-afp] $ hg log --rev . --template {rev}
[isabelle-repo-afp] $ hg id --branch
[afp] $ hg showconfig paths.default
[afp] $ hg pull --rev default
pulling from https://bitbucket.org/isa-afp/afp-devel/
no changes found
[afp] $ hg update --clean --rev default
0 files updated, 0 files merged, 0 files removed, 0 files unresolved
[afp] $ hg --config extensions.purge= clean --all
[afp] $ hg log --rev . --template {node}
[afp] $ hg log --rev . --template {rev}
No emails were triggered.
[isabelle-repo-afp] $ /bin/sh -xe /tmp/hudson614999419807434459.sh
+ Admin/jenkins/run_build afp
+ set -e
+ PROFILE=afp
+ shift
+ bin/isabelle components -a
+ bin/isabelle jedit -bf
### Building graph browser ...
warning: [options] bootstrap class path not set in conjunction with -source 1.4
warning: [options] source value 1.4 is obsolete and will be removed in a future release
warning: [options] target value 1.4 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
Note: GraphBrowser/GraphBrowser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
4 warnings
### Building Isabelle/Scala ...
### Building Isabelle/jEdit ...
+ bin/isabelle ci_build_afp

=== CONFIGURATION ===

ML_PLATFORM="x86_64-linux"
ML_HOME="/media/data/jenkins/.isabelle/contrib/polyml-5.6-1/x86_64-linux"
ML_SYSTEM="polyml-5.6"
ML_OPTIONS="-H 4000 --gcthreads 2 --maxheap 8G"

=== BUILD ===

Build started at Mon, 3 Oct 2016 19:02:09 GMT
Isabelle id c9f3a94cb825
AFP id 24b4ab705dfd

=== LOG ===

*** Bad session root directory: "$ISABELLE_HOME/afp/thys/Fisher_Yates"
*** The error(s) above occurred in session catalog "$ISABELLE_HOME/afp/thys/ROOTS"
Build step 'Execute shell' marked build as failure
Archiving artifacts
No emails were triggered.
Finished: FAILURE